vcfpp
vcfpp::BcfRecord Member List

This is the complete list of members for vcfpp::BcfRecord, including all inherited members.

addLineFromString(const std::string &vcfline)vcfpp::BcfRecordinline
allINFO()vcfpp::BcfRecordinline
allPhased() constvcfpp::BcfRecordinline
ALT() constvcfpp::BcfRecordinline
asString() constvcfpp::BcfRecordinline
BcfReader (defined in vcfpp::BcfRecord)vcfpp::BcfRecordfriend
BcfRecord()vcfpp::BcfRecordinline
BcfRecord(BcfHeader &h)vcfpp::BcfRecordinline
BcfWriter (defined in vcfpp::BcfRecord)vcfpp::BcfRecordfriend
CHROM() constvcfpp::BcfRecordinline
End() constvcfpp::BcfRecordinline
FILTER()vcfpp::BcfRecordinline
getFORMAT(std::string tag, T &v)vcfpp::BcfRecordinline
getFORMAT(std::string tag, std::vector< std::string > &v)vcfpp::BcfRecordinline
getGenotypes(T &v)vcfpp::BcfRecordinline
getGenotypes(std::vector< int > &v)vcfpp::BcfRecordinline
getINFO(std::string tag, T &v)vcfpp::BcfRecordinline
getINFO(std::string tag, T &v)vcfpp::BcfRecordinline
getINFO(std::string tag, T &v)vcfpp::BcfRecordinline
gtPhasevcfpp::BcfRecord
hasBND() constvcfpp::BcfRecordinline
hasDEL() constvcfpp::BcfRecordinline
hasINDEL() constvcfpp::BcfRecordinline
hasINS() constvcfpp::BcfRecordinline
hasMNP() constvcfpp::BcfRecordinline
hasOTHER() constvcfpp::BcfRecordinline
hasOVERLAP() constvcfpp::BcfRecordinline
hasSNP() constvcfpp::BcfRecordinline
ID() constvcfpp::BcfRecordinline
initHeader(BcfHeader &h)vcfpp::BcfRecordinline
isGenoMissingvcfpp::BcfRecord
isIndel() constvcfpp::BcfRecordinline
isMultiAllelics() constvcfpp::BcfRecordinline
isMultiAllelicSNP() constvcfpp::BcfRecordinline
isNoneMissing() constvcfpp::BcfRecordinline
isSNP() constvcfpp::BcfRecordinline
isSV() constvcfpp::BcfRecordinline
operator<<(std::ostream &out, const BcfRecord &v)vcfpp::BcfRecordfriend
ploidy() constvcfpp::BcfRecordinline
POS() constvcfpp::BcfRecordinline
QUAL()vcfpp::BcfRecordinline
REF() constvcfpp::BcfRecordinline
removeFORMAT(std::string tag)vcfpp::BcfRecordinline
removeINFO(std::string tag)vcfpp::BcfRecordinline
resetHeader(BcfHeader &h)vcfpp::BcfRecordinline
setCHR(const std::string &s)vcfpp::BcfRecordinline
setFILTER(const std::string &s)vcfpp::BcfRecordinline
setFORMAT(std::string tag, const T &v)vcfpp::BcfRecordinline
setFORMAT(std::string tag, const T &v)vcfpp::BcfRecordinline
setGenotypes(const std::vector< int > &v)vcfpp::BcfRecordinline
setID(const std::string &s)vcfpp::BcfRecordinline
setINFO(std::string tag, const T &v)vcfpp::BcfRecordinline
setINFO(std::string tag, const T &v)vcfpp::BcfRecordinline
setPhasing(const std::vector< char > &v)vcfpp::BcfRecordinline
setPloidy(int v)vcfpp::BcfRecordinline
setPOS(int64_t p)vcfpp::BcfRecordinline
setQUAL(float q)vcfpp::BcfRecordinline
setQUAL(char q)vcfpp::BcfRecordinline
setRefAlt(const std::string &s)vcfpp::BcfRecordinline
Start() constvcfpp::BcfRecordinline
swap_REF_ALT()vcfpp::BcfRecordinline
typeOfGTvcfpp::BcfRecord
~BcfRecord() (defined in vcfpp::BcfRecord)vcfpp::BcfRecordinline