Introduction

This project https://github.com/Zilong-Li/vcfpp introduces a single C++ file as interface to the basic htslib, which can be easily included in a C++ program for scripting high-performance genomic analyses.

vcfpp.BcfHeader keeps track of the header information in VCF/BCF
vcfpp.BcfRecord keeps track of the variants information in VCF/BCF
vcfpp.BcfReader streams in variants from VCF/BCF file or stdin
vcfpp.BcfWriter streams out variants to VCF/BCF file or stdout

Installation

include "vcfpp.h" to your program and compile it by g++ my.cpp -std=c++11 -Wall -I. -lhts
make sure you have https://github.com/samtools/htslib installed on your system and the it is in your environment.

Copyright: Copyright (C) 2022 Zilong Li . This project is governed by the LICENSE file in https://github.com/Zilong-Li/vcfpp.